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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30437964_30438433_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
30437964 - 30438433
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
GCGCAATATCTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTATTTTTATCT
Flanking Amino Acid:
ISLAGISFCGADVGGFIGDP
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
54.2
0.1
1
43.9
41.4
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
62.8
0.48
1.6
76.96
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015742
30432387 - 30452828
20442