Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30439020_30439436_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30439020 - 30439436

Intron Length:

417

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGAGTAT

5'SS Class:

major

3'SS Sequence:

TCATGATTTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TCCTCCTGACTT

Flanking Amino Acid:

ELHNLYGFYQQMATAEGLIK

Intron Amino Acid Position:

549

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

38.3

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

77.3

0.61

0.9

73.6

40.7

Minor 5ss

36.4

-1.5

3.7

54.5

49.7

Minor BPS

56.2

0.27

1.8

72.16

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015065

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015742

30432387 - 30452828

20442