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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30439581_30440489_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30439581 - 30440489
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TATGTCCTAACT
Flanking Amino Acid:
ADQFAFKTYKGSTNILFVWN
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
88.7
25.2
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
68.1
0.41
0.9
61.3
33.8
Minor 5ss
42.3
-0.8
2.8
59.2
45.4
Minor BPS
62.9
0.48
1.8
81.54
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015742
30432387 - 30452828
20442