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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30442892_30443054_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30442892 - 30443054
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAACT
5'SS Class:
major
3'SS Sequence:
ATACTCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
GCTTCATTCATA
Flanking Amino Acid:
DIFKQFAQLTGTQALPPLFS
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
71.2
38.7
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
70.3
0.46
0.9
62.5
38.9
Minor 5ss
35.1
-1.7
3.2
50.8
45.1
Minor BPS
51
0.03
2
65
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015742
30432387 - 30452828
20442