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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30443863_30444409_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30443863 - 30444409
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TTCTTTGTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTACATCTAACA
Flanking Amino Acid:
HAESLLLKNTSDGDAYRLYN
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
78.6
0.64
0.8
72.7
37.5
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
51.2
0.03
1.8
67.88
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015742
30432387 - 30452828
20442