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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30445815_30446847_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30445815 - 30446847
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCCTAT
5'SS Class:
weak_major
3'SS Sequence:
TCTGTTTATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTGTTTATAT
Flanking Amino Acid:
NEEAASDSSKEKQEDLGLWQ
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
65.8
42.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77.1
0.61
0.9
72.9
36.6
Minor 5ss
49.7
-0
3
72.7
44.5
Minor BPS
49.2
0.02
2.1
72.46
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015742
30432387 - 30452828
20442