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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30450546_30451817_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30450546 - 30451817
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAC
U12 Branch Point Sequence:
CTAAAAACAATT
Flanking Amino Acid:
FKECNQIAFYRRQKLLRPGK
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
52.9
0.07
1.1
59.6
32.7
Major PPT
77
0.61
1
76.7
37.4
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
38
-0.8
2
53.58
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015742
30432387 - 30452828
20442