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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30451881_30452799_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30451881 - 30452799
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCTG
5'SS Class:
major
3'SS Sequence:
CTGCTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GGTTTCTGAACA
Flanking Amino Acid:
MEAAVPGEASVQDEAVDKS
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
64.3
47.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
81.1
0.7
0.8
72.7
37.5
Minor 5ss
39.9
-1.1
3.4
55.8
48.4
Minor BPS
68
0.56
1.4
73.91
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015742
30432387 - 30452828
20442