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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30471242_30472394_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30471242 - 30472394
Intron Length:
1153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAC
U12 Branch Point Sequence:
CTTTTGTCTACA
Flanking Amino Acid:
QKEPMLKESFEGMKMRSTKQ
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
63.6
0.34
1.2
55.4
41.7
Major PPT
85.8
0.8
0.8
80
32.2
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
44.5
-0.4
2.4
62.69
43.6

Associated Gene:

Gene:
TMEM87A
Ensembl Gene ID:
ENSAPLG00000015845
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016540
30453029 - 30474498
21470
ENSAPLT00000016533
30453029 - 30475412
22384