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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30484619_30485828_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30484619 - 30485828
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTATTTTCATA
Flanking Amino Acid:
GASLFTCDLQHSDTGEEVLR
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.2
0.61
0.8
72.5
37.6
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
49.9
-0
1.7
63.8
37.1

Associated Gene:

Gene:
VPS39
Ensembl Gene ID:
ENSAPLG00000016003
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016719
30479694 - 30500835
21142