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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30486637_30488167_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30486637 - 30488167
Intron Length:
1531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTCTTTATTA
Flanking Amino Acid:
GFKRDYYLIRVDGKGSIKEL
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.5
40.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.2
0.66
0.8
78.4
34.6
Minor 5ss
36.6
-1.5
3
41.4
44.7
Minor BPS
73.6
0.74
1.5
82.84
32.3

Associated Gene:

Gene:
VPS39
Ensembl Gene ID:
ENSAPLG00000016003
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016719
30479694 - 30500835
21142