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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30488352_30488858_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30488352 - 30488858
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGCCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATATTTTCACCT
Flanking Amino Acid:
LNWTDIPIAMEHQPPYIIAV
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
80.6
33.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
64.3
0.32
0.9
59
37.1
Minor 5ss
33.5
-1.9
3.1
41.3
44.8
Minor BPS
50.4
0.09
1.8
70.82
40.4

Associated Gene:

Gene:
VPS39
Ensembl Gene ID:
ENSAPLG00000016003
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016719
30479694 - 30500835
21142