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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30488980_30489336_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30488980 - 30489336
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATTAAGT
5'SS Class:
major
3'SS Sequence:
GACTTCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
AACTTAGTAACT
Flanking Amino Acid:
LQRPRFITSGGTNIIYVASN
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.1
60.9
43.5
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
79.3
0.66
0.9
73
37
Minor 5ss
40.9
-1
2.9
49.5
46.3
Minor BPS
47.8
-0
2.2
68.18
42.5

Associated Gene:

Gene:
VPS39
Ensembl Gene ID:
ENSAPLG00000016003
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016719
30479694 - 30500835
21142