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Intron Name: Anas_platyrhynchos_platyrhynchos_5_30489458_30489951_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30489458 - 30489951

Intron Length:

494

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

AATTTGTGTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTTTATCAATT

Flanking Amino Acid:

KQFELALQLAEMKDDSDSEK

Intron Amino Acid Position:

287

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

78.5

35.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.4

62.6

43.4

Minor 5ss

40.6

-1.1

2.8

58.6

39.3

Minor BPS

57.5

0.32

1.8

78.05

38.2

Associated Gene:

Gene:

VPS39

Ensembl Gene ID:

ENSAPLG00000016003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016719

30479694 - 30500835

21142