About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30490082_30491227_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30490082 - 30491227
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTATGTATGACT
Flanking Amino Acid:
SMQVFAKLGTDPTHVMGLYP
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.2
0.61
0.9
77.6
36.1
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
50.8
0.11
2.1
76.66
40.1

Associated Gene:

Gene:
VPS39
Ensembl Gene ID:
ENSAPLG00000016003
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016719
30479694 - 30500835
21142