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Intron Name: Anas_platyrhynchos_platyrhynchos_5_30491371_30492220_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30491371 - 30492220

Intron Length:

850

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTACGTCCTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

TAAAACTTGATT

Flanking Amino Acid:

HLALIDYLTQKRSQLVKKLN

Intron Amino Acid Position:

378

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

0.9

77.7

30.1

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

75.8

0.58

0.9

66.4

40.5

Minor 5ss

31.6

-2.1

3.2

41.8

38.8

Minor BPS

56.5

0.29

1.5

70.76

39.8

Associated Gene:

Gene:

VPS39

Ensembl Gene ID:

ENSAPLG00000016003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016719

30479694 - 30500835

21142