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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30492365_30492921_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30492365 - 30492921
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGAAT
U12 Branch Point Sequence:
TATGATTGAATG
Flanking Amino Acid:
DTTLLKCYLHTNVALVAPLL
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
86
24.8
Major BPS
65.8
0.39
1.4
75.7
36.5
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
43.1
-0.8
3.1
62.8
42
Minor BPS
47.7
-0.3
1.7
54.19
41.1

Associated Gene:

Gene:
VPS39
Ensembl Gene ID:
ENSAPLG00000016003
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016719
30479694 - 30500835
21142