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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30493064_30493354_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30493064 - 30493354
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTATCTGAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTGTTTATCT
Flanking Amino Acid:
LYEKKGLHEKALQVLVDQSK
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
62.3
0.28
1.2
63.7
41.8
Minor 5ss
38
-1.4
3.1
50.1
46.4
Minor BPS
64.5
0.53
2
87.39
38.7

Associated Gene:

Gene:
VPS39
Ensembl Gene ID:
ENSAPLG00000016003
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016719
30479694 - 30500835
21142