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Intron Name: Anas_platyrhynchos_platyrhynchos_5_30493442_30494835_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30493442 - 30494835

Intron Length:

1394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAATGAT

5'SS Class:

major

3'SS Sequence:

TCTTGTGTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

AGAAATTTAACA

Flanking Amino Acid:

ERTVQYLQHLGTENLHLVFS

Intron Amino Acid Position:

502

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.66

74.7

35.6

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

81.2

0.7

0.9

72.6

42.4

Minor 5ss

33.3

-1.9

3.4

40.2

Minor BPS

55.3

0.16

1.5

61.67

37.6

Associated Gene:

Gene:

VPS39

Ensembl Gene ID:

ENSAPLG00000016003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016719

30479694 - 30500835

21142