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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30495991_30496463_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30495991 - 30496463
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
MKEYLHSLPADKTPVPAGEE
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.1
0.72
0.9
77.5
35.8
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
VPS39
Ensembl Gene ID:
ENSAPLG00000016003
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016719
30479694 - 30500835
21142