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Intron Name: Anas_platyrhynchos_platyrhynchos_5_30496593_30497070_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30496593 - 30497070

Intron Length:

478

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

GCTATCTCACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

TAGCTTTTGACT

Flanking Amino Acid:

SRLISDFPFDGLLEERALLL

Intron Amino Acid Position:

642

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

75.5

29.5

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

63.4

0.3

0.9

55.9

39.9

Minor 5ss

35.2

-1.7

2.8

38.4

40.8

Minor BPS

0.46

1.2

72.56

38.6

Associated Gene:

Gene:

VPS39

Ensembl Gene ID:

ENSAPLG00000016003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016719

30479694 - 30500835

21142