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Intron Name: Anas_platyrhynchos_platyrhynchos_5_30497174_30498100_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30497174 - 30498100

Intron Length:

927

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGGATG

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTGTTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

TTTTACGTAATT

Flanking Amino Acid:

HILKDTNMAENYCHKHYDRN

Intron Amino Acid Position:

676

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

76.2

39.3

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

79.9

0.67

0.8

37.4

Minor 5ss

37.6

-1.4

3.3

41.4

Minor BPS

64.2

0.52

2.2

88.84

36.2

Associated Gene:

Gene:

VPS39

Ensembl Gene ID:

ENSAPLG00000016003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016719

30479694 - 30500835

21142