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Intron Name: Anas_platyrhynchos_platyrhynchos_5_30498147_30498730_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30498147 - 30498730

Intron Length:

584

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

TTGTGTGAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCACAA

U12 Branch Point Sequence:

GTTTCACAAACT

Flanking Amino Acid:

YDRNKDGNKDVYLSLLRMYL

Intron Amino Acid Position:

692

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

78.2

36.4

Major BPS

68.5

0.46

75.3

29.8

Major PPT

63.3

0.3

1.1

58.7

45.5

Minor 5ss

38.5

-1.3

2.8

50.4

39.2

Minor BPS

49.9

0.07

2.2

79.08

42.4

Associated Gene:

Gene:

VPS39

Ensembl Gene ID:

ENSAPLG00000016003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016719

30479694 - 30500835

21142