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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30518816_30519498_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30518816 - 30519498
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCGAGC
5'SS Class:
major
3'SS Sequence:
TTGCTGGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AAGTCTGTGATT
Flanking Amino Acid:
NLKESPRKDEVPVVAVLGSG
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
60.4
44.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
72.2
0.5
1
65.5
41
Minor 5ss
44.2
-0.6
2.9
60.7
44
Minor BPS
48.6
-0
2
65.16
40.2

Associated Gene:

Gene:
PLA2G4F
Ensembl Gene ID:
ENSAPLG00000002083
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002125
30518729 - 30533638
14910