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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30521628_30522831_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30521628 - 30522831
Intron Length:
1204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTGTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TCCTCACTAATC
Flanking Amino Acid:
RPNISSGDFAEWCEFTPYEV
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
74.5
0.55
0.9
72.7
37.5
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
50.7
0
1.9
63.95
41.9

Associated Gene:

Gene:
PLA2G4F
Ensembl Gene ID:
ENSAPLG00000002083
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002125
30518729 - 30533638
14910