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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30522970_30524949_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30522970 - 30524949
Intron Length:
1980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAGTATTAAATT
Flanking Amino Acid:
RPEPRICFLQGMWGSAFAAS
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
74.3
34.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
92
0.94
0.6
87.8
22.1
Minor 5ss
39.2
-1.2
3.4
56.9
47.4
Minor BPS
48.8
-0
1.8
64.06
40.8

Associated Gene:

Gene:
PLA2G4F
Ensembl Gene ID:
ENSAPLG00000002083
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002125
30518729 - 30533638
14910