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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30526572_30527139_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30526572 - 30527139
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGAGAC
5'SS Class:
major
3'SS Sequence:
TCTTTGACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAA
U12 Branch Point Sequence:
TGTTCTTTGACA
Flanking Amino Acid:
FNFSWEAPFEVLELAQKYCE
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
0.9
67.3
31.4
Major BPS
66.7
0.42
1.1
69.7
35.6
Major PPT
71.9
0.49
1
66.9
38.1
Minor 5ss
31.4
-2.1
3.3
40.3
46.1
Minor BPS
79.8
0.93
1
83.15
30.6

Associated Gene:

Gene:
PLA2G4F
Ensembl Gene ID:
ENSAPLG00000002083
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002125
30518729 - 30533638
14910