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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30527327_30528659_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30527327 - 30528659
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TAGAATATAAAT
Flanking Amino Acid:
NDTFRKYKAPGIERESEDEK
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
92.8
0.96
0.6
88.6
20.9
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
45
-0.3
1.8
61.53
41.5

Associated Gene:

Gene:
PLA2G4F
Ensembl Gene ID:
ENSAPLG00000002083
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002125
30518729 - 30533638
14910