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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30528866_30533608_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30528866 - 30533608
Intron Length:
4743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTCAGCAGT
5'SS Class:
major
3'SS Sequence:
GTTAGCAACAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TCAGTTAGAATC
Flanking Amino Acid:
LALQRRKRKNERAGKPSVA*
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.4
65.7
45.7
Major BPS
66.1
0.4
1
73
31.5
Major PPT
45
-0.2
1.7
43.6
41.4
Minor 5ss
38.9
-1.2
3
54.2
42.8
Minor BPS
42.7
-0.5
1.6
47.86
36.1

Associated Gene:

Gene:
PLA2G4F
Ensembl Gene ID:
ENSAPLG00000002083
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002125
30518729 - 30533638
14910