About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30546684_30547647_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30546684 - 30547647
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTGTTAACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTGTTAACA
Flanking Amino Acid:
CMRNLRKADVLSQTDCYVKL
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.3
76.2
39.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.9
0.56
1
70
39.4
Minor 5ss
41.2
-1
2.8
50.4
39.3
Minor BPS
72.4
0.7
2
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002881
30546653 - 30569770
23118