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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30547785_30548847_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30547785 - 30548847
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTTAT
U12 Branch Point Sequence:
GGGCGTTTATGT
Flanking Amino Acid:
FHFMIQSVVKNILELTVCDE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
29.6
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
78.6
0.64
0.7
76.4
25.7
Minor 5ss
39.2
-1.2
3
51.6
45.1
Minor BPS
39.7
-0.7
2.1
50.31
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002881
30546653 - 30569770
23118