About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30558890_30559563_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30558890 - 30559563
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTATAT
5'SS Class:
major
3'SS Sequence:
TCTTTATATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTCTTTATAT
Flanking Amino Acid:
LFIDSMIHDEENTCKLSDQQ
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.3
33
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
82.2
0.72
0.9
77.2
35.2
Minor 5ss
45.8
-0.4
2.9
64.9
46.4
Minor BPS
65
0.55
1.7
82.03
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002881
30546653 - 30569770
23118