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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30559679_30560675_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30559679 - 30560675
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACATAAGT
Flanking Amino Acid:
KDNFSTLDFKEWVEFTPYEV
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79
0.65
0.9
72.7
36.5
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
52.4
0.15
2.1
79.86
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002881
30546653 - 30569770
23118