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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30562399_30562884_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30562399 - 30562884
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
AAGTTTTTGACT
Flanking Amino Acid:
LENESFCMWKDTVLDSSPNQ
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
85.3
0.79
0.8
82.1
34.6
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
65.1
0.56
1.2
73.12
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002881
30546653 - 30569770
23118