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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30563052_30563884_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30563052 - 30563884
Intron Length:
833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGATGTTT
5'SS Class:
major
3'SS Sequence:
TTTGTCAATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TCTTTGTCAATC
Flanking Amino Acid:
LNYSGGSQTLPLDLFSEYCL
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1
70.2
36.1
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
76
0.58
1
67.6
42.7
Minor 5ss
37.4
-1.4
3.5
52.3
46.7
Minor BPS
49.2
-0
2.2
65.51
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002881
30546653 - 30569770
23118