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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30621938_30624414_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
30621938 - 30624414
Intron Length:
2477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTGATAGTT
5'SS Class:
major
3'SS Sequence:
ACTGCTACGTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TCTGCAGTAACC
Flanking Amino Acid:
MKNNTFLRWYLSLPTASVQ
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.26
1
63.3
34.6
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
46
-0.2
1.7
51.7
42.1
Minor 5ss
32.8
-2
3.6
49
42.4
Minor BPS
48.7
-0.1
2.3
67.13
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008164
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008470
30621909 - 30639947
18039