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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30624527_30624924_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30624527 - 30624924
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTTGTTAAATC
Flanking Amino Acid:
FHFTIQSQVKNILELKVCDE
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.5
37.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
83.8
0.76
0.8
76.4
37.6
Minor 5ss
33.3
-1.9
3.1
43.9
43.5
Minor BPS
51.9
0.04
2
67.85
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008164
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008470
30621909 - 30639947
18039