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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30630838_30631690_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30630838 - 30631690
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGCTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCCTGCTTAAAG
Flanking Amino Acid:
SYISGSSGTTWTMTKLYEDA
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
76.5
33.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
70.6
0.46
1
70.4
34.1
Minor 5ss
28.6
-2.5
3.2
36.4
42
Minor BPS
54.7
0.01
2
60.06
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008164
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008470
30621909 - 30639947
18039