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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30633222_30633877_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30633222 - 30633877
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GTTACTGGAACT
Flanking Amino Acid:
KDKVATKDFREWVEFTPYEV
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
69.7
0.44
1.1
65.2
45.5
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
49.3
0.03
2.1
74.45
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008164
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008470
30621909 - 30639947
18039