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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30659793_30662796_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
30659793 - 30662796
Intron Length:
3004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGCTCTTT
5'SS Class:
weak_major
3'SS Sequence:
GACTCTGTCTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCCTATTTAACT
Flanking Amino Acid:
QLIANFLASLKSRNLDVRLE
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.9
0.19
1.1
61.6
39.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
48.6
-0
1.7
57.2
43
Minor 5ss
45
-0.5
3.3
64
42
Minor BPS
69.7
0.7
1.5
80.33
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017413
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038918
30651691 - 30672695
21005