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Intron Name: Anas_platyrhynchos_platyrhynchos_5_30664932_30665388_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30664932 - 30665388

Intron Length:

457

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

AATGTGATAACA

Flanking Amino Acid:

SYITGSSGSTWTLSHLYQSP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

71.4

40.1

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

86.6

0.82

0.7

80.5

31.5

Minor 5ss

31.8

-2.1

3.1

36.7

42.5

Minor BPS

44.8

-0.4

2.3

59.32

40.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017413

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038918

30651691 - 30672695

21005

ENSAPLT00000038529

30662810 - 30672617

9808