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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30668982_30670054_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30668982 - 30670054
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCTGTTGAT
5'SS Class:
weak_major
3'SS Sequence:
AGAAGGAGACGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTCCTCTACCT
Flanking Amino Acid:
RCSLRCTQHRPSLPARNHEL
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.1
0.05
1.4
56.5
45.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
36.6
-0.7
1.6
18.5
35.1
Minor 5ss
18.6
-3.6
3.8
23.7
37.3
Minor BPS
50.5
0.09
2
73.75
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017413
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038529
30662810 - 30672617
9808