Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30672225_30672408_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30672225 - 30672408

Intron Length:

184

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTGT

5'SS Class:

strong_major

3'SS Sequence:

CTTGATTTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

CTTTTCTTGATT

Flanking Amino Acid:

NDTFRKYKEPGVERSPAEMA

Intron Amino Acid Position:

450

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.9

78.8

38.3

Major BPS

83.8

0.84

73.6

41.8

Major PPT

72.8

0.51

68.9

41.6

Minor 5ss

45.6

-0.5

2.9

46.2

Minor BPS

76.3

0.91

1.1

86.06

34.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017413

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038918

30651691 - 30672695

21005

ENSAPLT00000038529

30662810 - 30672617

9808