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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30703614_30704472_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30703614 - 30704472
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTGG
5'SS Class:
major
3'SS Sequence:
CTCTGTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
ATCAGTGTAAAT
Flanking Amino Acid:
HLQQDLQDHEVPVVAIITTG
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
65.1
41.6
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
70.9
0.47
0.9
65.7
34.8
Minor 5ss
47.4
-0.3
2.4
57.6
41.4
Minor BPS
41.5
-0.5
2.3
59.69
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030124
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048186
30700139 - 30713031
12893