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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30707054_30709596_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
30707054 - 30709596
Intron Length:
2543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCAAACAT
5'SS Class:
weak_major
3'SS Sequence:
TCTCCTGCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATCAGTCATT
Flanking Amino Acid:
NAVNQTVDVSDEDPVLPTRP
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.3
57.6
41.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.8
0.62
0.9
69.1
37
Minor 5ss
28.5
-2.5
3.1
36.5
41.5
Minor BPS
43.6
-0.4
2.5
67.11
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030124
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048186
30700139 - 30713031
12893