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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30712200_30712825_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30712200 - 30712825
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
AACTTATTATTT
Flanking Amino Acid:
NDTFREYKAPGVKRCCSEME
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
88.8
0.87
0.7
81.6
35.8
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
48.4
-0
1.8
64.09
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030124
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048186
30700139 - 30713031
12893