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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30719843_30721448_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30719843 - 30721448
Intron Length:
1606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTAACATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACA
Flanking Amino Acid:
RARNIHQADVLSQTDCYVSL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.2
0.61
1
70.7
39
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008168
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008471
30719788 - 30734154
14367
ENSAPLT00000040768
30719764 - 30734154
14391