Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30721586_30721971_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30721586 - 30721971

Intron Length:

386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTGAGC

5'SS Class:

major

3'SS Sequence:

CTTCCCTTCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

CCTTTCATATTT

Flanking Amino Acid:

FYFRIQGQVKNVLELGLYDK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

60.8

43.9

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

80.5

0.69

0.7

72.5

32.2

Minor 5ss

31.6

-2.1

3.3

43.6

Minor BPS

49.1

0.01

1.9

67.66

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008168

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040768

30719764 - 30734154

14391

ENSAPLT00000008471

30719788 - 30734154

14367