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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30722132_30727519_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
30722132 - 30727519
Intron Length:
5388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTGACAAA
5'SS Class:
weak_major
3'SS Sequence:
TGCTCCAGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TTTTCCTGATCT
Flanking Amino Acid:
QVSSEIRYGIDHLDVRLGFD
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.6
0.04
1.2
52.2
40.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
63.3
0.3
1
54.6
40.2
Minor 5ss
33.2
-1.9
3.1
36.7
42
Minor BPS
73.8
0.82
1.7
93.24
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008168
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040768
30719764 - 30734154
14391