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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30723354_30727514_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
30723354 - 30727514
Intron Length:
4161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAACCAAA
5'SS Class:
weak_major
3'SS Sequence:
ATCTCTGCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTCCTGATCT
Flanking Amino Acid:
IHVTPDPDHLDVRLG
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.2
58.8
42.2
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
75
0.56
0.9
65.9
40.3
Minor 5ss
45.5
-0.5
2.7
53.6
44.6
Minor BPS
73.8
0.82
1.7
93.24
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008168
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020071
30723277 - 30734154
10878